{
  "_id": "6a27b2af24555f66ed537729",
  "Package": "LCPA",
  "Type": "Package",
  "Title": "A General Framework for Latent Classify and Profile Analysis",
  "Version": "1.0.2",
  "Date": "2026-04-10",
  "Author": "Haijiang Qin [aut, cre, cph] (ORCID:\n<https://orcid.org/0009-0000-6721-5653>), Lei Guo [aut, cph]\n(ORCID: <https://orcid.org/0000-0002-8273-3587>)",
  "Authors@R": "c(person(given = \"Haijiang\", \nfamily = \"Qin\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"haijiang133@outlook.com\",\ncomment = c(ORCID = \"0009-0000-6721-5653\")),\nperson(given = \"Lei\",\nfamily = \"Guo\",\nrole = c(\"aut\", \"cph\"),\nemail = \"happygl1229@swu.edu.cn\",\ncomment = c(ORCID = \"0000-0002-8273-3587\")))",
  "Maintainer": "Haijiang Qin <haijiang133@outlook.com>",
  "Description": "A unified latent class modeling framework that encompasses\nboth latent class analysis (LCA) and latent profile analysis\n(LPA), offering a one-stop solution for latent class modeling.\nIt implements state-of-the-art parameter estimation methods,\nincluding the expectation–maximization (EM) algorithm, neural\nnetwork estimation (NNE; requires users to have 'Python' and\nits dependent libraries installed on their computer), and\nintegration with 'Mplus' (requires users to have 'Mplus'\ninstalled on their computer). In addition, it provides commonly\nused model fit indices such as the Akaike information criterion\n(AIC) and Bayesian information criterion (BIC), as well as\nclassification accuracy measures such as entropy. The package\nalso includes fully functional likelihood ratio tests (LRT) and\nbootstrap likelihood ratio tests (BLRT) to facilitate model\ncomparison, along with bootstrap-based and observed information\nmatrix-based standard error estimation. Furthermore, it\nsupports the standard three-step approach for LCA, LPA, and\nlatent transition analysis (LTA) with covariates, enabling\ndetailed covariate analysis. Finally, it includes several\nuser-friendly auxiliary functions to enhance interactive\nusability.",
  "License": "GPL-3",
  "RoxygenNote": "7.3.3",
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  "Collate": "'adjust.response.R' 'adjust.model.R' 'check.response.R'\n'compare.model.R' 'EM.LCA.R' 'EM.LPA.R' 'get.AvePP.R'\n'get.CEP.R' 'get.entropy.R' 'get.fit.index.R'\n'get.Log.Lik.LCA.R' 'get.Log.Lik.LPA.R' 'get.Log.Lik.LTA.R'\n'get.npar.LCA.R' 'get.npar.LPA.R' 'get.npar.LTA.R'\n'get.P.Z.Xn.LCA.R' 'get.P.Z.Xn.LPA.R' 'get.SE.R'\n'install_python_dependencies.R' 'Kmeans.LCA.R' 'LCA.R' 'LCPA.R'\n'logit.R' 'LPA.R' 'LTA.R' 'LRT.test.R' 'LRT.test.Bootstrap.R'\n'LRT.test.VLMR.R' 'Mplus.LCA.R' 'Mplus.LPA.R' 'normalize.R'\n'plotResponse.R' 'RcppExports.R' 'rdirichlet.R' 'S3extract.R'\n'S3plot.R' 'S3print.R' 'S3summary.R' 'S3update.R'\n'sim.correlation.R' 'sim.LCA.R' 'sim.LPA.R' 'sim.LTA.R'\n'tools.R' 'utils.R' 'logpdf_component.R' 'zzz.R'",
  "Packaged": {
    "Date": "2026-06-09 05:58:08 UTC",
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  "Repository": "https://haijiangq.r-universe.dev",
  "Date/Publication": "2026-04-10 08:02:47 UTC",
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    "adjust.response",
    "check.response",
    "compare.model",
    "extract",
    "get.AvePP",
    "get.CEP",
    "get.entropy",
    "get.fit.index",
    "get.Log.Lik.LCA",
    "get.Log.Lik.LPA",
    "get.Log.Lik.LTA",
    "get.npar.LCA",
    "get.npar.LPA",
    "get.npar.LTA",
    "get.P.Z.Xn.LCA",
    "get.P.Z.Xn.LPA",
    "get.SE",
    "install_python_dependencies",
    "Kmeans.LCA",
    "LCA",
    "LCPA",
    "logit",
    "LPA",
    "LRT.test",
    "LRT.test.Bootstrap",
    "LRT.test.VLMR",
    "LTA",
    "normalize",
    "plotResponse",
    "rdirichlet",
    "sim.correlation",
    "sim.LCA",
    "sim.LPA",
    "sim.LTA"
  ],
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    {
      "page": "adjust.model",
      "title": "Align Latent Class/Profile Models via Optimal Permutation",
      "topics": [
        "adjust.model"
      ]
    },
    {
      "page": "adjust.response",
      "title": "Adjust Categorical Response Data for Polytomous Indicators",
      "topics": [
        "adjust.response"
      ]
    },
    {
      "page": "check.response",
      "title": "Validate response matrix against expected polytomous category counts",
      "topics": [
        "check.response"
      ]
    },
    {
      "page": "compare.model",
      "title": "Model Comparison Tool",
      "topics": [
        "compare.model"
      ]
    },
    {
      "page": "extract",
      "title": "S3 Methods: extract",
      "topics": [
        "extract",
        "extract.compare.model",
        "extract.fit.index",
        "extract.LCA",
        "extract.LCPA",
        "extract.LPA",
        "extract.LTA",
        "extract.SE",
        "extract.sim.LCA",
        "extract.sim.LPA",
        "extract.sim.LTA"
      ]
    },
    {
      "page": "get.AvePP",
      "title": "Calculate Average Posterior Probability (AvePP)",
      "topics": [
        "get.AvePP"
      ]
    },
    {
      "page": "get.CEP",
      "title": "Compute Classification Error Probability (CEP) Matrices",
      "topics": [
        "get.CEP"
      ]
    },
    {
      "page": "get.entropy",
      "title": "Calculate Classification Entropy",
      "topics": [
        "get.entropy"
      ]
    },
    {
      "page": "get.fit.index",
      "title": "Calculate Fit Indices",
      "topics": [
        "get.fit.index"
      ]
    },
    {
      "page": "get.Log.Lik.LCA",
      "title": "Calculate Log-Likelihood for Latent Class Analysis",
      "topics": [
        "get.Log.Lik.LCA"
      ]
    },
    {
      "page": "get.Log.Lik.LPA",
      "title": "Calculate Log-Likelihood for Latent Profile Analysis",
      "topics": [
        "get.Log.Lik.LPA"
      ]
    },
    {
      "page": "get.Log.Lik.LTA",
      "title": "Calculate Log-Likelihood for Latent Transition Analysis",
      "topics": [
        "get.Log.Lik.LTA"
      ]
    },
    {
      "page": "get.npar.LCA",
      "title": "Calculate Number of Free Parameters in Latent Class Analysis",
      "topics": [
        "get.npar.LCA"
      ]
    },
    {
      "page": "get.npar.LPA",
      "title": "Calculate Number of Free Parameters in Latent Profile Analysis",
      "topics": [
        "get.npar.LPA"
      ]
    },
    {
      "page": "get.npar.LTA",
      "title": "Calculate Number of Free Parameters in Latent Transition Analysis",
      "topics": [
        "get.npar.LTA"
      ]
    },
    {
      "page": "get.P.Z.Xn.LCA",
      "title": "Compute Posterior Latent Class Probabilities Based on Fixed Parameters",
      "topics": [
        "get.P.Z.Xn.LCA"
      ]
    },
    {
      "page": "get.P.Z.Xn.LPA",
      "title": "Compute Posterior Latent Profile Probabilities Based on Fixed Parameters",
      "topics": [
        "get.P.Z.Xn.LPA"
      ]
    },
    {
      "page": "get.SE",
      "title": "Compute Standard Errors",
      "topics": [
        "get.SE"
      ]
    },
    {
      "page": "install_python_dependencies",
      "title": "Install Required Python Dependencies for Neural Latent Variable Models",
      "topics": [
        "install_python_dependencies"
      ]
    },
    {
      "page": "Kmeans.LCA",
      "title": "Initialize LCA Parameters via K-means Clustering",
      "topics": [
        "Kmeans.LCA"
      ]
    },
    {
      "page": "LCA",
      "title": "Fit Latent Class Analysis Models",
      "topics": [
        "LCA"
      ]
    },
    {
      "page": "LCPA",
      "title": "Latent Class/Profile Analysis with Covariates",
      "topics": [
        "LCPA"
      ]
    },
    {
      "page": "logit",
      "title": "Compute the Logistic (Sigmoid) Function",
      "topics": [
        "logit"
      ]
    },
    {
      "page": "LPA",
      "title": "Fit Latent Profile Analysis",
      "topics": [
        "LPA"
      ]
    },
    {
      "page": "LRT.test",
      "title": "Likelihood Ratio Test",
      "topics": [
        "LRT.test"
      ]
    },
    {
      "page": "LRT.test.Bootstrap",
      "title": "Bootstrap Likelihood Ratio Test for Latent Class/Profile Models",
      "topics": [
        "LRT.test.Bootstrap"
      ]
    },
    {
      "page": "LRT.test.VLMR",
      "title": "Lo-Mendell-Rubin likelihood ratio test",
      "topics": [
        "LRT.test.VLMR"
      ]
    },
    {
      "page": "LTA",
      "title": "Latent Transition Analysis (LTA)",
      "topics": [
        "LTA"
      ]
    },
    {
      "page": "normalize",
      "title": "Column-wise Z-Score Standardization",
      "topics": [
        "normalize"
      ]
    },
    {
      "page": "plot",
      "title": "S3 Methods: plot",
      "topics": [
        "plot",
        "plot.LCA",
        "plot.LPA"
      ]
    },
    {
      "page": "plotResponse",
      "title": "Visualize Response Distributions with Density Plots",
      "topics": [
        "plotResponse"
      ]
    },
    {
      "page": "print",
      "title": "S3 Methods: print",
      "topics": [
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        "print.compare.model",
        "print.fit.index",
        "print.LCA",
        "print.LCPA",
        "print.LPA",
        "print.LTA",
        "print.SE",
        "print.sim.LCA",
        "print.sim.LPA",
        "print.sim.LTA",
        "print.summary.compare.model",
        "print.summary.fit.index",
        "print.summary.LCA",
        "print.summary.LCPA",
        "print.summary.LPA",
        "print.summary.LTA",
        "print.summary.SE",
        "print.summary.sim.LCA",
        "print.summary.sim.LPA",
        "print.summary.sim.LTA"
      ]
    },
    {
      "page": "rdirichlet",
      "title": "Generate Random Samples from the Dirichlet Distribution",
      "topics": [
        "rdirichlet"
      ]
    },
    {
      "page": "sim.correlation",
      "title": "Generate a Random Correlation Matrix via C-Vine Partial Correlations",
      "topics": [
        "sim.correlation"
      ]
    },
    {
      "page": "sim.LCA",
      "title": "Simulate Data for Latent Class Analysis",
      "topics": [
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      "page": "sim.LPA",
      "title": "Simulate Data for Latent Profile Analysis",
      "topics": [
        "sim.LPA"
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    },
    {
      "page": "sim.LTA",
      "title": "Simulate Data for Latent Transition Analysis (LTA)",
      "topics": [
        "sim.LTA"
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    },
    {
      "page": "summary",
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      "topics": [
        "summary",
        "summary.compare.model",
        "summary.fit.index",
        "summary.LCA",
        "summary.LCPA",
        "summary.LPA",
        "summary.LTA",
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        "summary.sim.LCA",
        "summary.sim.LPA",
        "summary.sim.LTA"
      ]
    },
    {
      "page": "update",
      "title": "S3 Methods: update",
      "topics": [
        "update",
        "update.LCA",
        "update.LCPA",
        "update.LPA",
        "update.LTA",
        "update.sim.LCA",
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